Index A | B | C | D | F | G | M | N | P | R | S | T A aggregate_flowframes() (in module flowsom.pp) B BaseClusterEstimator (class in flowsom.models) BaseFlowSOMEstimator (class in flowsom.models) BatchFlowSOMEstimator (class in flowsom.models) build_MST() (flowsom.FlowSOM method) C clean_anndata() (flowsom.FlowSOM method) cluster_labels (flowsom.FlowSOM attribute) (flowsom.models.BaseFlowSOMEstimator attribute) (flowsom.models.BatchFlowSOMEstimator attribute) (flowsom.models.FlowSOMEstimator attribute) codes (flowsom.models.BaseFlowSOMEstimator attribute) (flowsom.models.BatchFlowSOMEstimator attribute) (flowsom.models.FlowSOMEstimator attribute) ConsensusCluster (class in flowsom.models) copy() (flowsom.FlowSOM method) D distances (flowsom.models.BaseFlowSOMEstimator attribute) (flowsom.models.BatchFlowSOMEstimator attribute) (flowsom.models.FlowSOMEstimator attribute) F fit() (flowsom.models.BaseFlowSOMEstimator method) (flowsom.models.BatchFlowSOMEstimator method) (flowsom.models.ConsensusCluster method) (flowsom.models.FlowSOMEstimator method) (flowsom.models.SOMEstimator method) fit_predict() (flowsom.models.BaseClusterEstimator method) (flowsom.models.BaseFlowSOMEstimator method) (flowsom.models.BatchFlowSOMEstimator method) (flowsom.models.ConsensusCluster method) (flowsom.models.FlowSOMEstimator method) (flowsom.models.SOMEstimator method) flowsom module FlowSOM (class in flowsom) flowsom.io module flowsom.models module flowsom.pl module flowsom.pp module flowsom.tl module flowsom_clustering() (in module flowsom) FlowSOMEstimator (class in flowsom.models) FlowSOMmary() (in module flowsom.pl) G get_cell_data() (flowsom.FlowSOM method) get_channels() (in module flowsom.tl) get_cluster_data() (flowsom.FlowSOM method) get_cluster_percentages_positive() (in module flowsom.tl) get_counts() (in module flowsom.tl) get_features() (in module flowsom.tl) get_markers() (in module flowsom.tl) get_metacluster_percentages_positive() (in module flowsom.tl) get_metadata_routing() (flowsom.models.BaseClusterEstimator method) (flowsom.models.BaseFlowSOMEstimator method) (flowsom.models.BatchFlowSOMEstimator method) (flowsom.models.ConsensusCluster method) (flowsom.models.FlowSOMEstimator method) (flowsom.models.SOMEstimator method) get_params() (flowsom.models.BaseClusterEstimator method) (flowsom.models.BaseFlowSOMEstimator method) (flowsom.models.BatchFlowSOMEstimator method) (flowsom.models.ConsensusCluster method) (flowsom.models.FlowSOMEstimator method) (flowsom.models.SOMEstimator method) get_percentages() (in module flowsom.tl) M map_data_to_codes() (in module flowsom.models) metacluster() (flowsom.FlowSOM method) metacluster_labels (flowsom.FlowSOM attribute) (flowsom.models.BaseFlowSOMEstimator attribute) (flowsom.models.BatchFlowSOMEstimator attribute) (flowsom.models.FlowSOMEstimator attribute) module flowsom flowsom.io flowsom.models flowsom.pl flowsom.pp flowsom.tl N new_data() (flowsom.FlowSOM method) P plot_2D_scatters() (in module flowsom.pl) plot_labels() (in module flowsom.pl) plot_marker() (in module flowsom.pl) plot_numbers() (in module flowsom.pl) plot_pies() (in module flowsom.pl) plot_stars() (in module flowsom.pl) plot_variable() (in module flowsom.pl) predict() (flowsom.models.BaseFlowSOMEstimator method) (flowsom.models.BatchFlowSOMEstimator method) (flowsom.models.FlowSOMEstimator method) (flowsom.models.SOMEstimator method) R read_csv() (in module flowsom.io) read_FCS() (in module flowsom.io) read_input() (flowsom.FlowSOM method) run_model() (flowsom.FlowSOM method) S set_fit_request() (flowsom.models.ConsensusCluster method) set_n_clusters() (flowsom.models.BaseFlowSOMEstimator method) (flowsom.models.BatchFlowSOMEstimator method) (flowsom.models.FlowSOMEstimator method) set_params() (flowsom.models.BaseClusterEstimator method) (flowsom.models.BaseFlowSOMEstimator method) (flowsom.models.BatchFlowSOMEstimator method) (flowsom.models.ConsensusCluster method) (flowsom.models.FlowSOMEstimator method) (flowsom.models.SOMEstimator method) SOM() (in module flowsom.models) SOMEstimator (class in flowsom.models) subset() (flowsom.FlowSOM method) (flowsom.models.BaseFlowSOMEstimator method) (flowsom.models.BatchFlowSOMEstimator method) (flowsom.models.FlowSOMEstimator method) T test_outliers() (flowsom.FlowSOM method)