flowsom.pl.plot_pies

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flowsom.pl.plot_pies#

flowsom.pl.plot_pies(fsom, cell_types, cmap=<matplotlib.colors.ListedColormap object>, title=None, **kwargs)#

Plot FlowSOM grid or tree, with pies indicating another clustering or manual gating result.

Parameters:

  • fsom (FlowSOM) – A FlowSOM object

  • cell_types (np.array) – An array containing a value for every cell

  • cmap (default: <matplotlib.colors.ListedColormap object at 0x75d3eec837c0>) – A colormap to use

  • title (str) – Title of the plot

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