flowsom.flowsom_clustering

flowsom.flowsom_clustering(inp, cols_to_use=None, n_clusters=10, xdim=10, ydim=10, **kwargs)

Perform FlowSOM clustering on an anndata object and returns the anndata object.

The FlowSOM clusters and metaclusters are added as variable.

Parameters:

inp (ad.AnnData / str) – An anndata or filepath to an FCS file